European Bioinformatics Institute (EBI)

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PhenoMeNal: accessing metabolomics workflows in Galaxy

• beginner
Metabolomics Chemical biology Galaxy
e-learning

Open Targets informatics tools: Quick tour

Drug discovery Drug development
Course materials

Small molecule chemistry: from proteins to pathways: EMBL-EBI resources in practice
Recorded webinar

A guide to sequence analysis resources in Job Dispatcher
e-learning

AlphaFold: A practical guide

Structural biology Structure prediction Machine learning Artificial intelligence
Recorded webinar

InterProScan

Gene and protein families Function analysis
e-learning

European Genome-phenome Archive: Quick tour

Genotype and phenotype EGA Biomedical data Phenotype Genetic data
Recorded webinar

Introduction to exploring genome-phenome data with EGA

Genotype and phenotype
Recorded webinar

Practically FAIR

Translational medicine Data architecture, analysis and design
Course materials

Proteomics bioinformatics 2024
Recorded webinar

MetaboLights: the home for metabolomics experiments and derived information

Metabolomics
Recorded webinar

A guide to analysing binding sites in protein structures

Protein structure analysis Proteins
e-learning

GOA and QuickGO: Quick tour

Gene ontology Gene ontology annotation Controlled vocabulary
Course materials

Introduction to multi-omics data integration and visualisation
Recorded webinar

Getting gene and genome data programmatically: Ensembl REST API
Recorded webinar

Multi-omics comparative pathway analysis with ReactomeGSA

Omics
Course materials

Genome bioinformatics: resequencing and variant calling
Recorded webinar

Non-invasive phenotyping to quantify the dynamics of plant-environment interaction

Plant biology
Recorded webinar

A beginner’s guide to interpreting results from biostatistics

Statistics and probability
Recorded webinar

The PerMedCoE competency framework to guide training and career development

Computational biology Personalised medicine
Recorded webinar

A FAIR and scalable workflow for plankton phenogenomics at single cell level

Data management Marine biology Bioimaging FAIR data Workflows
Recorded webinar

MGnify API: accessing microbiome data computationally

Microbial ecology
Recorded webinar

Poster winners, PerMedCoE Summer School 2023

Computational biology Personalised medicine
Recorded webinar

Exploring target-disease associations with the Open Targets Platform’s new interface
e-learning

Functional genomics: An introduction to EMBL-EBI resources

Gene expression Functional genomics Microarray High-throughput sequencing
e-learning

Nextflow: An introduction

Workflows Nextflow Cloud Pipelines Containers EOSC-Life
Recorded webinar

Exploring macromolecular protein assemblies and their visualisation with Complex Portal

Protein interactions
Course materials

Genome-resolved metagenomics bioinformatics
Recorded webinar

Principles of research data management

Data management
Recorded webinar

The Ensembl Rapid Release genome browser

Genomics

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PhenoMeNal: accessing metabolomics workflows in Galaxy

Open Targets informatics tools: Quick tour

Small molecule chemistry: from proteins to pathways: EMBL-EBI resources in practice

A guide to sequence analysis resources in Job Dispatcher

AlphaFold: A practical guide

InterProScan

European Genome-phenome Archive: Quick tour

Introduction to exploring genome-phenome data with EGA

Practically FAIR

Proteomics bioinformatics 2024

MetaboLights: the home for metabolomics experiments and derived information

A guide to analysing binding sites in protein structures

GOA and QuickGO: Quick tour

Introduction to multi-omics data integration and visualisation

Getting gene and genome data programmatically: Ensembl REST API

Multi-omics comparative pathway analysis with ReactomeGSA

Genome bioinformatics: resequencing and variant calling

Non-invasive phenotyping to quantify the dynamics of plant-environment interaction

A beginner’s guide to interpreting results from biostatistics

The PerMedCoE competency framework to guide training and career development

A FAIR and scalable workflow for plankton phenogenomics at single cell level

MGnify API: accessing microbiome data computationally

Poster winners, PerMedCoE Summer School 2023

Exploring target-disease associations with the Open Targets Platform’s new interface

Functional genomics: An introduction to EMBL-EBI resources

Nextflow: An introduction

Exploring macromolecular protein assemblies and their visualisation with Complex Portal

Genome-resolved metagenomics bioinformatics

Principles of research data management

The Ensembl Rapid Release genome browser

Introduction to pangenomes and why they are worth exploring

Concepts, methods, and resources in pangenomics

UniProt

A guide to UniProt for students

Metagenomics bioinformatics at MGnify

Evolution of the accessory genome

Inferring bacterial pangenomes with gene-based approaches

Computational Biology Training in Hematology 2025, Module 2

Making sense of massive genomic data by indexing at scale

Structural bioinformatics

Pangenome graphs as a new paradigm in comparative genomics

Pangenome annotations and resources in Ensembl

Chemicals in a biological context: metabolites, drugs, and beyond

Genome bioinformatics: from short- to long-read sequencing

Managing a bioinformatics core facility

Single-cell RNA-seq analysis with Python

Introduction to RNA-seq and functional interpretation

Introduction to multi-omics data integration and visualisation

Microscopy data analysis: machine learning and the BioImage Archive

Data-driven approaches to understanding dementia

Introduction to metabolomics analysis

Systems biology: from large datasets to biological insight

From sequences to structures: Protein characterisation using EMBL-EBI APIs

Data science for life scientists

Proteomics bioinformatics

Bioinformatics for immunologists

Metagenomics bioinformatics at MGnify

Causality in biomedicine: going beyond associations

Structural bioinformatics

Genome bioinformatics: from short- to long-read sequencing