Galaxy Training

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Events (34)

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slides

Galaxy Administrator Time Burden and Technology Usage

• beginner
Galaxy Server administration deploying maintenance survey
slides

Visualisations in Galaxy

• beginner
Visualisation
e-learning

Version Control with Git

• beginner
Software engineering Foundations of Data Science
e-learning

Python - Argparse

•• intermediate
Software engineering Foundations of Data Science
slides

Phylogenetics - Back to Basics - Estimating trees from alignments

• beginner
Evolutionary biology Evolution
e-learning

Introduction to sequencing with Python (part two)

• beginner
Software engineering Foundations of Data Science jupyter-notebook
slides

Recurrent neural networks (RNN) Deep Learning - Part 2

• beginner
Statistics and probability Statistics and machine learning
e-learning

Introduction to deep learning

• beginner
Statistics and probability Statistics and machine learning
e-learning

Multiomics data analysis using MultiGSEA

• beginner
Proteomics metabolomics multi-omics proteomics transcriptomics
slides

Feedforward neural networks (FNN) Deep Learning - Part 1

• beginner
Statistics and probability Statistics and machine learning
slides

Introduction to DNA Methylation data analysis

• beginner
Epigenomics Epigenetics
slides

Introduction to Transcriptomics

• beginner
Transcriptomics
e-learning

Metaproteomics tutorial

• beginner
Proteomics Proteogenomics Biodiversity Taxonomy microgalaxy
e-learning

EncyclopeDIA

• beginner
Proteomics DIA
slides

Introduction to proteomics, protein identification, quantification and statistical modelling

• beginner
Proteomics
slides

Overview of the Galaxy Training Material

• beginner
Contributing to the Galaxy Training Material
slides

Bioinformatics Data Types and Databases

• beginner
Software engineering Foundations of Data Science
slides

Tool Shed: sharing Galaxy tools

• beginner
Software engineering Development in Galaxy
slides

An earth-system RO-Crate

• beginner
FAIR Data, Workflows, and Research earth-system marine omics ocean ro-crate
e-learning

Identification of the binding sites of the Estrogen receptor

• beginner
Epigenomics ChIP-seq Epigenetics work-in-progress
e-learning

Hi-C analysis of Drosophila melanogaster cells using HiCExplorer

• beginner
Epigenomics Epigenetics
e-learning

Running molecular dynamics simulations using GROMACS

•• intermediate
Computational chemistry
slides

Genome assembly quality control.

• beginner
Sequence assembly Assembly
e-learning

RO-Crate in Python

• beginner
FAIR Data, Workflows, and Research jupyter-notebook ro-crate
e-learning

Ansible

• beginner
Galaxy Server administration ansible
e-learning

Calling variants in non-diploid systems

• beginner
Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote
e-learning

End-to-End Tissue Microarray Image Analysis with Galaxy-ME

• beginner
Imaging
e-learning

SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

• beginner
Using Galaxy and Managing your Data covid19 ncbi
e-learning

Pre-processing of 10X Single-Cell ATAC-seq Datasets

• beginner
10x Single Cell epigenetics
slides

Foundational Aspects of Machine Learning

• beginner
Statistics and probability Statistics and machine learning ai-ml elixir

Showing 30 events out of 34 (also found 20 past events)

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Galaxy Administrator Time Burden and Technology Usage

Visualisations in Galaxy

Version Control with Git

Python - Argparse

Phylogenetics - Back to Basics - Estimating trees from alignments

Introduction to sequencing with Python (part two)

Recurrent neural networks (RNN) Deep Learning - Part 2

Introduction to deep learning

Multiomics data analysis using MultiGSEA

Feedforward neural networks (FNN) Deep Learning - Part 1

Introduction to DNA Methylation data analysis

Introduction to Transcriptomics

Metaproteomics tutorial

EncyclopeDIA

Introduction to proteomics, protein identification, quantification and statistical modelling

Overview of the Galaxy Training Material

Bioinformatics Data Types and Databases

Tool Shed: sharing Galaxy tools

An earth-system RO-Crate

Identification of the binding sites of the Estrogen receptor

Hi-C analysis of Drosophila melanogaster cells using HiCExplorer

Running molecular dynamics simulations using GROMACS

Genome assembly quality control.

RO-Crate in Python

Ansible

Calling variants in non-diploid systems

End-to-End Tissue Microarray Image Analysis with Galaxy-ME

SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

Pre-processing of 10X Single-Cell ATAC-seq Datasets

Foundational Aspects of Machine Learning

From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy

Learning Pathway Metagenomics data processing and analysis for microbiome

Learning Pathway Tool development for a nice & shiny subdomain

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

Learning Pathway Introductory SQL

Learning Pathway Train the Trainers

Learning Pathway Introduction to Galaxy and Ecological data analysis

Learning Pathway Proteogenomics

Learning Pathway Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq data

Learning Pathway Applying single-cell RNA-seq analysis

Learning Pathway Artificial Intelligence and Machine Learning in Life Sciences using Python

Learning Pathway Bacterial comparative genomics

Learning Pathway Building training material in Galaxy

Learning Pathway Introduction to Galaxy and Sequence analysis

Learning Pathway Machine learning

Learning Pathway Epigenetics data analysis with Galaxy

Learning Pathway Clinical metaproteomics workflows within Galaxy

Learning Pathway Gallantries Grant - Intellectual Output 3 - Data stewardship, federation, standardisation, and collaboration

Learning Pathway Admin Training Course

Learning Pathway Prediction of potential neoantigens

Learning Pathway Gallantries Grant - Intellectual Output 1 - Introduction to data analysis and -management, statistics, and coding

Learning Pathway Gallantries Grant - Intellectual Output 2 - Large-scale data analysis, and introduction to visualisation and data modelling

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

Learning Pathway Introductory Python

Learning Pathway Detection of AMR genes in bacterial genomes

Learning Pathway Genome annotation for prokaryotes

Learning Pathway Gallantries Grant - Intellectual Output 4 - Data analysis and modelling for evidence and hypothesis generation and knowledge discovery

Learning Pathway Genome annotation for eukaryotes

Learning Pathway Gallantries Grant - Intellectual Output 5 - Train-the-Trainer and mentoring programme

Learning Pathway Discovering Galaxy through climate analysis