Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Biological sequences3
    • Sequence analysis3
    • Sequence databases3
    • Community analysis2
    • Environmental microbiology2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Shotgun metagenomics2
    • Taxonomy2
    • Assembly1
    • Disease1
    • Epidemiology1
    • Function analysis1
    • Functional analysis1
    • Metatranscriptomics1
    • Pathology1
    • Protein function analysis1
    • Protein function prediction1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Show N_FILTERS more
    • Tool
    • Galaxy3
    • BamTools2
    • FastQC2
    • MultiQC2
    • SAMtools2
    • taxonomy_krona_chart2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Cutadapt1
    • FastTree1
    • Flye1
    • GraPhlAn1
    • HUMAnN21
    • JBrowse1
    • KrakenTools1
    • MLST1
    • Medaka1
    • MetaPhlAn1
    • Minimap21
    • NanoPlot1
    • Newick Utilities1
    • SortMeRNA1
    • export2graphlan1
    • fastp1
    • ggplot21
    • humann1
    • kraken21
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Microbiome2
    • microgalaxy2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • cyoa1
    • metatranscriptomics1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Engy Nasr
    • Bérénice Batut35
    • Subina Mehta18
    • Saskia Hiltemann17
    • Katherine Do13
    • Mehmet Tekman12
    • Yvan Le Bras12
    • Maria Doyle11
    • James Johnson10
    • Pavankumar Videm10
    • Wendi Bacon10
    • Anne Fouilloux9
    • Anton Nekrutenko9
    • Anup Kumar9
    • Helena Rasche9
    • Marie Josse9
    • Anthony Bretaudeau7
    • Cristóbal Gallardo7
    • Julia Jakiela7
    • Kaivan Kamali7
    • Nicola Soranzo7
    • Wolfgang Maier7
    • Anika Erxleben6
    • Björn Grüning6
    • Dave Clements6
    • Delphine Lariviere6
    • Anna Syme5
    • Beatriz Serrano-Solano5
    • Daniel Blankenberg5
    • Dechen Bhuming5
    • Erwan Corre5
    • Joachim Wolff5
    • Melanie Föll5
    • Paul Zierep5
    • Pratik Jagtap5
    • Simon Gladman5
    • Alexandre Cormier4
    • Alireza Khanteymoori4
    • Clemens Blank4
    • Coline Royaux4
    • Diana Chiang Jurado4
    • Florian Heyl4
    • Katarzyna Kamieniecka4
    • Krzysztof Poterlowicz4
    • Laura Leroi4
    • Leonid Kostrykin4
    • Lucille Delisle4
    • Mallory Freeberg4
    • Stéphanie Robin4
    • Vivek Bhardwaj4
    • Alex Ostrovsky3
    • Bazante Sanders3
    • Belinda Phipson3
    • Emma Leith3
    • Fidel Ramirez3
    • Guillaume Gricourt3
    • Ioana Popescu3
    • Jean-Loup Faulon3
    • Joan Hérisson3
    • Kenza Bazi-Kabbaj3
    • Khaled Jum'ah3
    • Marisa Loach3
    • Mo Heydarian3
    • Morgan Howells3
    • Riccardo Massei3
    • Simon Bray3
    • Thomas Duigou3
    • Anne Pajon2
    • Chao Zhang2
    • David Christiany2
    • Ekaterina Polkh2
    • Elisa Michon2
    • Esteban Perez-Wohlfeil2
    • Florence Combes2
    • Florian Christoph Sigloch2
    • Friederike Dündar2
    • Gildas Le Corguillé2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Jean-Karim Hériché2
    • Leily Rabbani2
    • Marius van den Beek2
    • Matthias Fahrner2
    • Miguel Roncoroni2
    • Nadia Goué2
    • Olivier Norvez2
    • Polina Polunina2
    • Praveen Kumar2
    • Ray Sajulga2
    • Ryan Abernathey2
    • Simon Benateau2
    • Sophia Hampe2
    • Timothy J. Griffin2
    • Torsten Seemann2
    • Valentin Loux2
    • Verena Moosmann2
    • Yves Vandenbrouck2
    • Ahmed Hamid Awan1
    • Allison Creason1
    • Anna Trigos1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning3
    • Bérénice Batut3
    • Helena Rasche3
    • Saskia Hiltemann3
    • Cristóbal Gallardo2
    • Paul Zierep2
    • Anthony Bretaudeau1
    • Anup Kumar1
    • Christine Oger1
    • Deepti Varshney1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Niall Beard1
    • Nicola Soranzo1
    • William Durand1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows
    • Associated Training Datasets3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Authors: Engy Nasr

and Difficulty level: Beginner

and Related resources: Associated Workflows

3 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • slides

    Mapping

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.