Training materials
Tools: Salmon
and Contributors: Pavankumar Videm
and Related resources: Associated Training Datasets
2 materials found
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Scientific topic
- Comparative transcriptomics1
- Transcriptome1
- Transcriptomics1
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Tool
- Salmon
- Galaxy27
- SCANPY9
- MultiQC4
- anndata4
- BEDTools3
- DeepTools3
- DropletUtils3
- Falco3
- FastQC3
- MACS3
- SAMtools3
- STAR3
- BWA2
- Bowtie 22
- RSeQC2
- RStudio2
- Trim Galore2
- pyGenomeTracks2
- Alevin1
- BamTools1
- Biopython1
- Cutadapt1
- DESeq21
- FeatureCounts1
- GOseq1
- IDR1
- IsoformSwitchAnalyzeR1
- JBrowse 21
- MEME1
- MethylDackel1
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC1
- PfamScan1
- R1
- SeqCode1
- Seurat1
- StringTie1
- Targetfinder.org1
- UCSC Genome Browser Utilities1
- Unipept1
- annotatemyids1
- blockbuster1
- compute_sequence_length1
- edgeR1
- epiScanpy1
- fastp1
- gffcompare1
- gffread1
- ggplot21
- miRDeep21
- pathview1
- rnaQUAST1
- scp1
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Content provider
- Galaxy Training2
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Difficulty level
- Beginner2
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Target audience
- Students2
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Contributor
- Pavankumar Videm
- Björn Grüning3
- Helena Rasche3
- Saskia Hiltemann3
- Beatriz Serrano-Solano2
- Bérénice Batut2
- Cristóbal Gallardo1
- David López1
- Gildas Le Corguillé1
- Jonathan Manning1
- Julia Jakiela1
- Mallory Freeberg1
- Marisa Loach1
- Marius van den Beek1
- Mehmet Tekman1
- Nate Coraor1
- Niall Beard1
- Nicola Soranzo1
- Teresa Müller1
- Wendi Bacon1
- William Durand1
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Resource type
- e-learning2
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Related resource
- Associated Training Datasets
- Associated Workflows2
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