Training materials
Target audience: Students
and Contributors: Bérénice Batut
and Related resources: Associated Training Datasets
138 materials found
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e-learning
Genome annotation with Braker3
•• intermediateGenomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1 -
e-learning
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
• beginnerMetagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome -
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
Genome annotation with Helixer
•• intermediateGenomics Biodiversity Zoology Plant biology Genome Annotation biodiversity eukaryota helixer jbrowse1 -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Network analysis with Heinz
• beginnerTranscriptomics metatranscriptomics network analysis -
e-learning
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis
• beginnerStatistics and probability Machine learning Pan-cancer Statistics and machine learning cancer biomarkers oncogenes and tumor suppressor genes -
e-learning
RAD-Seq Reference-based data analysis
• beginnerEcology EBV dataset EBV workflow Genetic composition EBV class RAD-seq Species population EBV class biodiversity