Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly2
    • Biological sequences2
    • Community analysis2
    • Environmental microbiology2
    • Epidemiology2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Public health2
    • Public health and epidemiology2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Shotgun metagenomics2
    • Taxonomy2
    • Antimicrobial stewardship1
    • DNA metabarcoding1
    • De novo genome sequencing1
    • Disease1
    • Environmental metabarcoding1
    • Exomes1
    • Genome annotation1
    • Genome sequencing1
    • Genomes1
    • Genomics1
    • Medical microbiology1
    • Metabarcoding1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Personal genomics1
    • RNA metabarcoding1
    • Synthetic genomics1
    • Viral genomics1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Whole genomes1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Galaxy6
    • Bandage2
    • FastQC2
    • kraken22
    • taxonomy_krona_chart2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • Bakta1
    • BamTools1
    • Bowtie 21
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Falco1
    • FastTree1
    • Flye1
    • JBrowse1
    • KrakenTools1
    • MEGAHIT1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • NanoPlot1
    • Newick Utilities1
    • QUAST1
    • SAMtools1
    • dada21
    • ggplot21
    • phyloseq1
    • shovill1
    • staramr1
    • tbl2gff31
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • microgalaxy
    • Assembly2
    • Microbiome2
    • assembly2
    • nanopore2
    • plants2
    • 16S1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • biodiversity1
    • cyoa1
    • illumina1
    • metabarcoding1
    • polishing1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Bazante Sanders1
    • Cristóbal Gallardo1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Deepti Varshney
    • Bérénice Batut7
    • Saskia Hiltemann7
    • Björn Grüning6
    • Cristóbal Gallardo6
    • Helena Rasche5
    • Wolfgang Maier4
    • Anthony Bretaudeau3
    • Teresa Müller3
    • Bazante Sanders2
    • Miaomiao Zhou2
    • Nate Coraor2
    • Verena Moosmann2
    • Beatriz Serrano-Solano1
    • Clea Siguret1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Matúš Kalaš1
    • Mélanie Petera1
    • Nuwan Goonasekera1
    • Paul Zierep1
    • Peter van Heusden1
    • Siyu Chen1
    • Willem de Koning1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Deepti Varshney

and Tools: fastp

and Keywords: microgalaxy

3 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    16S Microbial analysis with Nanopore data

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.