Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • DNA variation2
    • Genetic variation2
    • Genomic variation2
    • Mutation2
    • Polymorphism2
    • Somatic mutations2
    • Assembly1
    • Biological sequences1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Show N_FILTERS more
    • Tool
    • Galaxy5
    • SAMtools3
    • BWA2
    • fastp2
    • seqtk2
    • BCFtools1
    • NanoPlot1
    • Nextclade1
    • SRA Software Toolkit1
    • Trimmomatic1
    • Unicycler1
    • lofreq1
    • pangolin1
    • snpEff1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training5
    • Show N_FILTERS more
    • Keyword
    • covid19
    • Variant Analysis11
    • one-health7
    • microgalaxy6
    • virology5
    • Sequence analysis4
    • Ecology3
    • biodiversity3
    • cyoa3
    • prokaryote3
    • Assembly2
    • Contributing to the Galaxy Training Material2
    • EBV dataset2
    • EBV workflow2
    • Epigenetics2
    • Evolution2
    • Galaxy Server administration2
    • Genetic composition EBV class2
    • RAD-seq2
    • Transcriptomics2
    • git-gat2
    • illumina2
    • DDA1
    • Heatmap1
    • Introduction to Galaxy Analyses1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Proteomics1
    • QC1
    • Species population EBV class1
    • Species populations EBV class1
    • TMT1
    • Using Galaxy and Managing your Data1
    • alternative splicing1
    • ansible1
    • assembly1
    • bacteria1
    • bulk1
    • collections1
    • drosophila1
    • isoform switching1
    • phylogenetics1
    • rna-seq1
    • storage1
    • tools1
    • tuberculosis1
    • variant-analysis1
    • workflows1
    • Show N_FILTERS more
    • Difficulty level
    • Intermediate3
    • Beginner2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International5
    • Show N_FILTERS more
    • Target audience
    • Students5
    • Show N_FILTERS more
    • Author
    • Wolfgang Maier4
    • Anton Nekrutenko1
    • Bérénice Batut1
    • Daniel Blankenberg1
    • Dave Clements1
    • Marius van den Beek1
    • Simon Bray1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Helena Rasche8
    • Saskia Hiltemann8
    • Björn Grüning7
    • Bérénice Batut5
    • Beatriz Serrano-Solano2
    • Anthony Bretaudeau1
    • Anton Nekrutenko1
    • Armin Dadras1
    • Ava Hoffman1
    • Bert Droesbeke1
    • Candace Savonen1
    • Elizabeth Humphries1
    • Frederick Tan1
    • Jasper Ouwerkerk1
    • Katherine Cox1
    • Martin Čech1
    • Mehmet Tekman1
    • Mélanie Petera1
    • Natalie Kucher1
    • Nate Coraor1
    • Nicola Soranzo1
    • Simon Bray1
    • Simon Gladman1
    • Teresa Müller1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows4
    • Associated Training Datasets1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Keywords: covid19

and Contributors: Wolfgang Maier

and Resource type: e-learning

5 e-learning materials found
  • e-learning

    Automating Galaxy workflows using the command line

    • beginner
    Using Galaxy and Managing your Data covid19 variant-analysis workflows
  • e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• intermediate
    Sequence analysis covid19
  • e-learning

    Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data

    •• intermediate
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• intermediate
    Sequence assembly Assembly biodiversity covid19
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.