Training materials
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e-learning
Compute and analyze biodiversity metrics with PAMPA toolsuite
• beginnerEcology Community composition EBV class EBV dataset EBV workflow Species population EBV class biodiversity modeling -
e-learning
Biodiversity data exploration
• beginnerEcology biodiversity data quality taxonomic data -
e-learning
Cleaning GBIF data for the use in Ecology
• beginnerEcology biodiversity data cleaning data management gbif -
e-learning
Functional annotation of protein sequences
• beginnerGenomics Function analysis Protein sites, features and motifs Genome Annotation biodiversity eukaryote -
e-learning
Masking repeats with RepeatMasker
• beginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Comparative gene analysis in unannotated genomes
• beginnerGenomics Gene and protein families Sequence analysis Phylogeny Comparative genomics Genome Annotation annotation biodiversity cookbook eukaryote … -
e-learning
Chloroplast genome assembly
• beginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
e-learning
Champs blocs indicators
• beginnerEcology EBV dataset EBV workflow Ecosystem EBV class Marine ecosystems biodiversity