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• • Scientific topic
  • Data management66
  • Metadata management66
  • Research data management (RDM)66
  • Algorithms65
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  • FAIR data39
  • Findable, accessible, interoperable, reusable data39
  • Exomes36
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  • Biological sequences33
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  • Bayesian methods28
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  • Bottom-up proteomics27
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  • Proteomics27
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  • Comparative transcriptomics25
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  • Community analysis21
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  • Cloud computing9
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• • Operation
  • Data handling44
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  • Data extraction11
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  • Data visualisation2
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  • Alignment1
  • Alignment construction1
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  • Data editing1
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  • File formatting1
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  • Genome variant detection1
  • Germ line variant calling1
  • Image analysis1
  • Mathematical modelling1
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  • Mutation detection1
  • RNA-Seq analysis1
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  • Somatic variant calling1
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  • Variant mapping1
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• • Tool
  • Galaxy257
  • FastQC29
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  • MultiQC18
  • scikit-learn15
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  • Cutadapt12
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  • BLAST11
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  • taxonomy_krona_chart9
  • Falco8
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  • NanoPlot7
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  • ggplot27
  • kraken27
  • BamTools6
  • Bandage6
  • Galaxy Image Analysis6
  • JBrowse6
  • QUAST6
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  • scikit-image6
  • Biopython5
  • Bowtie 25
  • HISAT25
  • MetaPhlAn5
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
  • Chipster4
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  • Minimap24
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  • BCFtools3
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  • Bwa-mem23
  • CellProfiler3
  • Clustal 1.8 (Clustal W, Clustal X)3
  • DropletUtils3
  • GOseq3
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  • GraPhlAn3
  • MAFFT3
  • MSstats3
  • Newick Utilities3
  • R3
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  • Salmon3
  • SeqCode3
  • SortMeRNA3
  • Stacks3
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  • bx-python3
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  • gffcompare3
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  • seqtk3
  • xcms3
  • Bakta2
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  • Cardinal2
  • ChIPpeakAnno2
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  • Combine Metaphlan and HUMAnN2
  • DESeq22
  • FASTQE2
  • FastTree2
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  • GOEnrichment2
  • GenomeScope 2.02
  • HUMAnN22
  • Heinz2
  • InterMine2
  • InterMineR2
  • InterProScan (EBI)2
  • JBrowse 22
  • MAGeCK2
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  • MEME2
  • Medaka2
  • Merqury2
  • Ontology Lookup Service2
  • Open Babel2
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• • Standard database or policy
  • Minimum Information about Plant Phenotyping Experiment2
  • OBO Foundry2
  • Wheat Data Interoperability Guidelines 1
  • Bioschemas1
  • Chemical Entities of Biological Interest1
  • Common Workflow Language1
  • Crop Ontology1
  • Ensembl1
  • IUPAC International Chemical Identifier1
  • Identifiers.org Registry1
  • MDL molfile Format1
  • Multi-Crop Passport Descriptors1
  • Plant Phenotype Experiment Ontology1
  • STRING: functional protein association networks1
  • Schema.org1
  • Search Tool for Interactions of Chemicals1
  • Simplified Molecular Input Line Entry Specification Format1
  • The Human Metabolome Database1
  • Wheat Trait Ontology1
  • Wikidata1
  • data.eNanoMapper.net1
  • eNanoMapper Ontology1
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• • Content provider
  • Galaxy Training489
  • Swiss Institute of Bioinformatics51
  • Finn's Test Provider40
  • DTLS - Dutch Techcentre For Life Sciences31
  • Bioinformatics and Biomathematics Training Hub23
  • CINECA PROJECT9
  • ELIXIR Brazil9
  • IFB French Institute of Bioinformatics8
  • Centre for Digital Life Norway7
  • CSC - IT Center for Science5
  • Department of Bioinformatics - BiGCaT, Maastricht University5
  • ELIXIR Luxembourg5
  • ELIXIR Portugal5
  • ELIXIR-SI eLearning Platform (EeLP)5
  • EMBL-ABR4
  • NanoCommons4
  • University of Cambridge Bioinformatics Training4
  • Barcelona Supercomputing Center (BSC)3
  • European Bioinformatics Institute (EBI)3
  • COG-Train2
  • InterMine2
  • VIB Bioinformatics Core2
  • ELIXIR Norway1
  • ELIXIR Slovenia1
  • Novo Nordisk Foundation Center for Protein Research1
  • Test Provider1
  • de.NBI1
  • eNanoMapper1
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• • Keyword
  • Galaxy Server administration56
  • training52
  • Single Cell37
  • data management34
  • microgalaxy33
  • Foundations of Data Science32
  • biodiversity32
  • jupyter-notebook29
  • Ecology27
  • Proteomics26
  • Transcriptomics26
  • Contributing to the Galaxy Training Material25
  • Development in Galaxy24
  • Statistics and machine learning23
  • ansible20
  • FAIR data19
  • Microbiome19
  • genes and genomes19
  • FAIR Data, Workflows, and Research18
  • Genome Annotation18
  • Using Galaxy and Managing your Data18
  • git-gat18
  • FAIR17
  • interactive-tools17
  • Teaching and Hosting Galaxy training16
  • Assembly15
  • Climate15
  • fair15
  • earth-system14
  • reproducibility14
  • Data management planning13
  • Data analysis13
  • Epigenetics13
  • Introduction to Galaxy Analyses13
  • data stewardship13
  • medicine and health13
  • next generation sequencing13
  • Imaging12
  • Roslin Institute12
  • paper-replication12
  • transcriptomics12
  • work-in-progress12
  • Data management plan11
  • MIGHTS11
  • Sequence analysis11
  • Variant Analysis11
  • plants10
  • prokaryote10
  • services and resources10
  • data visualisation9
  • label-free9
  • ocean9
  • programming9
  • Evolution8
  • Metabolomics8
  • alan bridge group8
  • cyoa8
  • gmod8
  • mark ibberson group8
  • Babraham Institute7
  • DDA7
  • EBV dataset7
  • EBV workflow7
  • Metadata7
  • Ontologies7
  • dmp7
  • elixir7
  • environmental science7
  • jbrowse17
  • machine learning7
  • workflows7
  • EeLP6
  • Workflows6
  • assembly6
  • basic research6
  • bioimaging6
  • bioinformatics6
  • database curation6
  • deploying6
  • eLearning6
  • experimental biology6
  • infectious disease6
  • marc robinson-rechavi group6
  • metagenomics6
  • nanopore6
  • proteins and proteomes6
  • ro-crate6
  • train-the-trainers6
  • 10x5
  • 16S5
  • Clinical data5
  • DMP5
  • Data management planning5
  • ELIXIR-CONVERGE5
  • Galaxy Community Building5
  • Standards5
  • biostatistics5
  • covid195
  • data management plan5
  • data sharing5
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• • Difficulty level
  • Beginner
  • Not specified1088
  • Intermediate198
  • Advanced34
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• • Licence
  • Creative Commons Attribution 4.0 International545
  • License Not Specified114
  • Creative Commons Attribution Share Alike 4.0 International28
  • Creative Commons Attribution Non Commercial Share Alike 4.0 International12
  • Other (Not Open)12
  • Creative Commons Attribution Non Commercial No Derivatives 4.0 International8
  • Other (Non-Commercial)7
  • Apache License 2.04
  • Creative Commons Attribution Non Commercial 4.0 International4
  • Creative Commons Zero v1.0 Universal4
  • Other (Open)4
  • MIT License3
  • Creative Commons Attribution No Derivatives 4.0 International1
  • GNU General Public License v2.0 only1
  • GNU General Public License v3.0 only1
  • Other (Attribution)1
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• • Target audience
  • Students363
  • Galaxy Administrators80
  • Instructors46
  • PhD candidate27
  • Researchers24
  • Biologists21
  • PhD students16
  • Life Science Researchers15
  • bioinformaticians13
  • PhD candidates9
  • Bioinformaticians8
  • Master students7
  • Biomedical Researchers5
  • Biomedical researchers5
  • Data Managers5
  • Data Scientists5
  • Research Scientists5
  • Trainers5
  • All postgraduates4
  • Chemists4
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  • Post Docs4
  • Professors4
  • Training Designers4
  • Training instructors4
  • biologists4
  • data stewards4
  • Academia/ Research Institution3
  • Healthcare3
  • Industry3
  • Non-Profit Organisation3
  • Patient Advocates 3
  • data steward / data manager3
  • life scientists3
  • software developers, bioinformaticians3
  • rare disease patients representatives2
  • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
  • Bench biologists2
  • Biologists, Genomicists, Computer Scientists2
  • Laboratory technicians2
  • PhD2
  • Scientists2
  • Staff2
  • Undergraduate students2
  • Veterinarians2
  • computational scientists2
  • data manager2
  • policy officer2
  • post-docs2
  • project manager2
  • Anyone1
  • Beginners1
  • Biochemists1
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  • Computational biologists1
  • Computer Vision scientists1
  • Curators1
  • Developers1
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  • Graduate students1
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  • Microbiologists1
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  • PhD students, computer scientists, bioinformaticians and developers who need to maintain/extend existing tools or develop new tools for Galaxy. 1
  • Policy makers1
  • Post-Doctoral Fellows1
  • Postdoctoral researcher1
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  • Professor1
  • Public Health Professionals1
  • Python for Biologists1
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  • Scientists who want to optimise their literature searches1
  • Senior Managers1
  • Senior Researchers, Lab Managers, Postdocs and PhD Students with basic knowledge of DMPs. Participants in the "Introduction to Data Management Plans" workshop.1
  • Senior scientist/ Principal investigator1
  • Software providers1
  • System administrators1
  • Technicians1
  • beginner1
  • beginner bioinformaticians1
  • biocurators1
  • data managers1
  • database managers1
  • esearchers and research software engineers who would like to begin automating their analyses in workflows. 1
  • experimental nanoscientists1
  • geneticists1
  • journalists1
  • mass spectrometry1
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• • Author
  • Helena Rasche85
  • Bérénice Batut82
  • SIB Swiss Institute of Bioinformatics81
  • Saskia Hiltemann49
  • Björn Grüning32
  • Anton Nekrutenko22
  • Yvan Le Bras22
  • Nicola Soranzo20
  • Nate Coraor19
  • Simon Gladman19
  • Subina Mehta18
  • Wendi Bacon18
  • Katarzyna Kamieniecka17
  • Krzysztof Poterlowicz17
  • Marie Josse17
  • Anne Fouilloux16
  • Fotis E. Psomopoulos16
  • Anthony Bretaudeau15
  • Bazante Sanders14
  • Mehmet Tekman14
  • Julia Jakiela13
  • Katherine Do13
  • Maria Doyle13
  • The Carpentries13
  • Anup Kumar11
  • Dave Clements10
  • Donny Vrins10
  • James Johnson10
  • Khaled Jum'ah10
  • Mijke Jetten10
  • Pavankumar Videm10
  • Geert van Geest9
  • Lucille Delisle9
  • Wandrille Duchemin9
  • Anika Erxleben8
  • Celia van Gelder8
  • Cristóbal Gallardo8
  • Elisabeth Gasteiger8
  • Helen Brown8
  • Paul Zierep8
  • Daniel Blankenberg7
  • Delphine Lariviere7
  • Joachim Wolff7
  • John Chilton7
  • Kaivan Kamali7
  • Korbinian Bösl7
  • Laura Cooper7
  • Marius van den Beek7
  • Martin Čech7
  • Robert Andrews7
  • Sergio Martínez Cuesta7
  • Wolfgang Maier7
  • Allegra Via6
  • Andrew Mason6
  • Anne Pajon6
  • Branka Franicevic6
  • Coline Royaux6
  • ELIXIR Goblet Train the Trainers6
  • Melanie Föll6
  • Michael Charleston6
  • Morgan Howells6
  • Patricia Palagi6
  • Philippe Le Mercier6
  • Philippe Rocca-Serra6
  • Sara Morsy6
  • Valentin Loux6
  • Xenia Perez Sitja6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Anna Syme5
  • Beatriz Serrano-Solano5
  • Clemens Blank5
  • Dechen Bhuming5
  • Egon Willighagen5
  • Erwan Corre5
  • Hans-Rudolf Hotz5
  • Hélène Chiapello5
  • Kellie Snow5
  • Korneel Hens5
  • Laura Leroi5
  • Marie-Claude Blatter5
  • Mira Kuntz5
  • Munazah Andrabi5
  • Nick Juty5
  • Personalized Health Informatics Group5
  • Pratik Jagtap5
  • Saskia Lawson-Tovey5
  • Stéphanie Robin5
  • Alireza Khanteymoori4
  • Ana-Claudia Sima4
  • Deepak Tanwar4
  • Diana Chiang Jurado4
  • Eija Korpelainen4
  • Emma Griffiths4
  • Florian Heyl4
  • Frédéric de Lamotte4
  • Gildas Le Corguillé4
  • Grégoire Rossier4
  • Leonid Kostrykin4
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• • Contributor
  • Saskia Hiltemann421
  • Helena Rasche392
  • Björn Grüning305
  • Bérénice Batut188
  • Nicola Soranzo135
  • Martin Čech102
  • Cristóbal Gallardo83
  • Anthony Bretaudeau74
  • Niall Beard73
  • Wendi Bacon64
  • Nate Coraor60
  • Armin Dadras54
  • Gildas Le Corguillé50
  • William Durand50
  • Mehmet Tekman43
  • Simon Gladman42
  • Marius van den Beek41
  • Teresa Müller40
  • Lucille Delisle38
  • Yvan Le Bras37
  • Pavankumar Videm34
  • Beatriz Serrano-Solano26
  • Wolfgang Maier25
  • Maria Doyle22
  • Anne Fouilloux20
  • Julia Jakiela20
  • Anup Kumar17
  • Khaled Jum'ah16
  • Melanie Föll16
  • Subina Mehta16
  • Simon Bray15
  • Deepti Varshney14
  • Bazante Sanders13
  • Donny Vrins13
  • Pratik Jagtap13
  • Timothy J. Griffin13
  • Marie Josse12
  • Matthias Bernt12
  • Pablo Moreno12
  • Anton Nekrutenko11
  • Gianmauro Cuccuru11
  • Marisa Loach11
  • Mélanie Petera11
  • Paul Zierep11
  • Peter van Heusden11
  • David López10
  • Katarzyna Kamieniecka10
  • Mira Kuntz10
  • Delphine Lariviere9
  • Verena Moosmann8
  • Hans-Rudolf Hotz7
  • John Chilton7
  • Kaivan Kamali7
  • Leonid Kostrykin7
  • Melissa Burke7
  • Morgan Howells7
  • Alexandre Cormier6
  • Dave Clements6
  • Ekaterina Polkh6
  • Tomas Klingström6
  • Alex Ostrovsky5
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Florian Heyl5
  • John Davis5
  • Mallory Freeberg5
  • Sabine Österle5
  • Stéphanie Robin5
  • Anna Syme4
  • Clea Siguret4
  • Coline Royaux4
  • Daniel Sobral4
  • Dave B.4
  • Eli Chadwick4
  • Enis Afgan4
  • Fotis E. Psomopoulos4
  • Phil Reed4
  • Amirhossein Naghsh Nilchi3
  • Andrea Bagnacani3
  • Catherine Bromhead3
  • Clemens Blank3
  • Daniela Schneider3
  • David Philip Judge3
  • Diana Chiang Jurado3
  • Eija Korpelainen3
  • Engy Nasr3
  • Gautier Sarah3
  • Jean-François Dufayard3
  • Jennifer Hillman-Jackson3
  • Joachim Wolff3
  • Krzysztof Poterlowicz3
  • Laura Leroi3
  • Mateo Boudet3
  • Mateusz Kuzak3
  • Miaomiao Zhou3
  • Nuwan Goonasekera3
  • Pedro Fernandes3
  • Pinar Alper3
  • Roland Krause3
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• • Resource type
  • e-learning407
  • slides96
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  • hands-on tutorial5
  • PDF4
  • Exercise3
  • Handout3
  • Scripts3
  • slideck/ presentation3
  • Computer Software2
  • FREE online course2
  • Installation instructions2
  • Jupyter notebook2
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  • Vignette2
  • Series of videos1
  • API reference1
  • Book1
  • Carpentries style curriculum1
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  • ViralZone1
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• • Related resource
  • Associated Training Datasets293
  • Associated Workflows221
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  • Jupyter Notebook (with Solutions)28
  • Jupyter Notebook (without Solutions)28
  • ansible19
  • git-gat18
  • jobs5
  • deploying3
  • monitoring3
  • ro-crate3
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  • CanCOGeN1
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  • SIG1
  • Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
  • Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
  • apollo21
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• • Node
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