Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Community analysis16
    • Environmental microbiology16
    • Metagenomics16
    • Microbial ecology16
    • Microbiome16
    • Molecular community analysis16
    • Shotgun metagenomics16
    • Biological sequences12
    • Sequence analysis12
    • Sequence databases12
    • Taxonomy10
    • DNA metabarcoding5
    • Environmental metabarcoding5
    • Metabarcoding5
    • RNA metabarcoding5
    • eDNA metabarcoding5
    • eRNA metabarcoding5
    • Antimicrobial stewardship2
    • Assembly2
    • Epidemiology2
    • Function analysis2
    • Functional analysis2
    • Medical microbiology2
    • Metatranscriptomics2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Protein function analysis2
    • Protein function prediction2
    • Public health2
    • Public health and epidemiology2
    • Sequence assembly2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Communicable disease1
    • Disease1
    • Exomes1
    • Extensive drug resistance (XDR)1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Infectious disease1
    • Metagenomic sequencing1
    • Mobile genetic elements1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • Personal genomics1
    • Shotgun metagenomic sequencing1
    • Synthetic genomics1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • Transposons1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • Galaxy16
    • taxonomy_krona_chart9
    • FastQC5
    • MetaPhlAn5
    • KrakenTools4
    • MultiQC4
    • kraken24
    • Cutadapt3
    • GraPhlAn3
    • Newick Utilities3
    • SortMeRNA3
    • export2graphlan3
    • fastp3
    • humann3
    • mothur3
    • Combine Metaphlan and HUMAnN2
    • HUMAnN22
    • Minimap22
    • NanoPlot2
    • ggplot22
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Bracken1
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • FastTree1
    • Flye1
    • Krona1
    • MEGAHIT1
    • MLST1
    • Medaka1
    • Racon1
    • SAMtools1
    • Unicycler1
    • dada21
    • lotus21
    • miniasm1
    • phyloseq1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training16
    • Show N_FILTERS more
    • Keyword
    • Microbiome
    • microgalaxy37
    • Proteomics36
    • Single Cell34
    • biodiversity27
    • Genome Annotation26
    • Transcriptomics26
    • Galaxy Server administration24
    • Statistics and machine learning23
    • Assembly16
    • Using Galaxy and Managing your Data15
    • jbrowse115
    • Ecology14
    • fair14
    • gmod14
    • prokaryote13
    • FAIR Data, Workflows, and Research12
    • Variant Analysis12
    • Epigenetics11
    • Sequence analysis11
    • paper-replication11
    • work-in-progress11
    • Evolution10
    • Foundations of Data Science10
    • Imaging10
    • Introduction to Galaxy Analyses10
    • MIGHTS10
    • Metabolomics10
    • ansible10
    • data stewardship10
    • eukaryote10
    • interactive-tools10
    • cyoa9
    • git-gat9
    • jupyter-notebook9
    • label-free9
    • plants9
    • Climate8
    • Computational chemistry7
    • DDA7
    • dmp7
    • 10x6
    • EBV dataset6
    • assembly6
    • collections6
    • nanopore6
    • transcriptomics6
    • EBV workflow5
    • Visualisation5
    • data management5
    • illumina5
    • label-TMT115
    • metagenomics5
    • one-health5
    • 16S4
    • DIA4
    • Genetic composition EBV class4
    • HeLa4
    • bacteria4
    • bioimaging4
    • covid194
    • metabarcoding4
    • mouse4
    • ChIP-seq3
    • FAIR3
    • QC3
    • RAD-seq3
    • amr3
    • apollo23
    • epigenetics3
    • metatranscriptomics3
    • open3
    • pangeo3
    • proteogenomics3
    • rmarkdown-notebook3
    • Community composition EBV class2
    • Contributing to the Galaxy Training Material2
    • Data Paper2
    • EML2
    • Metadata2
    • Species population EBV class2
    • Species populations EBV class2
    • Synthetic Biology2
    • VGP2
    • bulk2
    • climate2
    • data import2
    • deep-learning2
    • ecology2
    • essential genes2
    • eukaryota2
    • evolution2
    • human2
    • jobs2
    • jupyter-lab2
    • machine-learning2
    • maker2
    • monitoring2
    • networking2
    • pacbio2
    • Show N_FILTERS more
    • Difficulty level
    • Beginner16
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International16
    • Show N_FILTERS more
    • Target audience
    • Students16
    • Show N_FILTERS more
    • Author
    • Bérénice Batut11
    • Saskia Hiltemann7
    • Paul Zierep4
    • Pratik Jagtap3
    • Subina Mehta3
    • Dave Clements2
    • Emma Leith2
    • Engy Nasr2
    • Praveen Kumar2
    • Ray Sajulga2
    • Sophia Hampe2
    • Cristóbal Gallardo1
    • Didier Debroas1
    • Fotis E. Psomopoulos1
    • Nadia Goué1
    • Nikos Pechlivanis1
    • Polina Polunina1
    • Siyu Chen1
    • Sujai Kumar1
    • Teresa Müller1
    • Willem de Koning1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann15
    • Bérénice Batut14
    • Helena Rasche13
    • Björn Grüning7
    • Paul Zierep7
    • Cristóbal Gallardo5
    • Deepti Varshney5
    • Teresa Müller4
    • Engy Nasr3
    • Christine Oger2
    • Niall Beard2
    • Nicola Soranzo2
    • Willem de Koning2
    • William Durand2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Bethan Manley1
    • Clea Siguret1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Matthias Bernt1
    • Nate Coraor1
    • Nikos Pechlivanis1
    • Nuwan Goonasekera1
    • Siyu Chen1
    • Sophia Hampe1
    • Subina Mehta1
    • Sujai Kumar1
    • Tarnima Omara1
    • Wolfgang Maier1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning15
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows15
    • Quarto/RMarkdown Notebook3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Related resources: Associated Training Datasets

and Keywords: Microbiome

16 materials found
  • e-learning

    Building an amplicon sequence variant (ASV) table from 16S data using DADA2

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy
  • e-learning

    Analyses of metagenomics data - The global picture

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Microbiome microgalaxy
  • e-learning

    Binning of metagenomic sequencing data

    • beginner
    Metagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy
  • e-learning

    16S Microbial Analysis with mothur (short)

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy
  • e-learning

    Antibiotic resistance detection

    • beginner
    Metagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr …
  • slides

    Introduction to metatranscriptomics

    • beginner
    Metagenomics Microbial ecology Microbiome
  • 1
  • 2
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.