Training materials
Licence: Creative Commons Attribution 4.0 International
and Scientific topics: Sequence databases
34 materials found
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Scientific topic
- Sequence databases
- Algorithms78
- Computer programming78
- Data structures78
- Programming languages78
- Software development78
- Software engineering78
- Exomes47
- Genome annotation47
- Genomes47
- Genomics47
- Personal genomics47
- Synthetic genomics47
- Viral genomics47
- Whole genomes47
- Data management46
- Metadata management46
- Research data management (RDM)46
- Bottom-up proteomics44
- Discovery proteomics44
- MS-based targeted proteomics44
- MS-based untargeted proteomics44
- Metaproteomics44
- Peptide identification44
- Protein and peptide identification44
- Proteomics44
- Quantitative proteomics44
- Targeted proteomics44
- Top-down proteomics44
- Bayesian methods36
- Biostatistics36
- Descriptive statistics36
- Gaussian processes36
- Inferential statistics36
- Markov processes36
- Multivariate statistics36
- Probabilistic graphical model36
- Probability36
- Statistics36
- Statistics and probability36
- Biological sequences34
- Sequence analysis34
- Assembly28
- Comparative transcriptomics28
- FAIR data28
- Findable, accessible, interoperable, reusable data28
- Sequence assembly28
- Transcriptome28
- Transcriptomics28
- Computational ecology27
- Ecoinformatics27
- Ecological informatics27
- Ecology27
- Ecosystem science27
- Community analysis24
- Environmental microbiology24
- Microbial ecology24
- Microbiome24
- Molecular community analysis24
- Metagenomics23
- Shotgun metagenomics23
- Antimicrobial stewardship22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- DNA variation19
- Genetic variation19
- Genomic variation19
- Mutation19
- Polymorphism19
- Somatic mutations19
- Diffraction experiment17
- Imaging17
- Microscopy17
- Microscopy imaging17
- Optical super resolution microscopy17
- Photonic force microscopy17
- Photonic microscopy17
- Taxonomy15
- Epigenomics13
- Biodiversity12
- Exometabolomics12
- LC-MS-based metabolomics12
- MS-based metabolomics12
- MS-based targeted metabolomics12
- MS-based untargeted metabolomics12
- Mass spectrometry-based metabolomics12
- Metabolites12
- Metabolome12
- Metabolomics12
- Metabonomics12
- NMR-based metabolomics12
- Evolution10
- Evolutionary biology10
- Computational chemistry9
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Tool
- Galaxy32
- FastQC8
- taxonomy_krona_chart8
- JBrowse6
- kraken25
- BamTools4
- Cutadapt4
- MetaPhlAn4
- NanoPlot4
- SAMtools4
- fastp4
- mothur4
- BLAST3
- BWA3
- KrakenTools3
- MAFFT3
- MultiQC3
- Newick Utilities3
- Bakta2
- Bracken2
- Diamond2
- FASTQE2
- GraPhlAn2
- HUMAnN22
- Minimap22
- SortMeRNA2
- export2graphlan2
- ggplot22
- humann2
- pycoQC2
- seqtk2
- staramr2
- tbl2gff32
- ABRicate1
- Apollo1
- BCFtools1
- BEDTools1
- Bandage1
- Bowtie1
- Bowtie 21
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- Combine Metaphlan and HUMAnN1
- DeepTools1
- FASTX-Toolkit1
- Falco1
- FastTree1
- Flye1
- FreeBayes1
- ISEScan1
- Integron Finder1
- Krona1
- MLST1
- Medaka1
- NCBI fcs1
- PlasmidFinder1
- QIIME1
- Racon1
- RapidNJ1
- Recentrifuge1
- TRANSIT1
- Trimmomatic1
- Unicycler1
- Vcflib1
- bx-python1
- compute_sequence_length1
- cshl_fastx_reverse_complement1
- dada21
- ete1
- iqtree1
- miniasm1
- orfipy1
- phyloseq1
- snippy1
- trimAl1
- varVAMP1
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Content provider
- Galaxy Training34
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Keyword
- microgalaxy22
- Microbiome14
- Sequence analysis12
- Genome Annotation6
- gmod6
- jbrowse16
- 16S5
- metabarcoding5
- prokaryote5
- bacteria3
- illumina3
- metagenomics3
- nanopore3
- plants3
- taxonomic profiling3
- Variant Analysis2
- amr2
- biodiversity2
- covid192
- diversity2
- metatranscriptomics2
- Heatmap1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- annotation1
- apollo21
- assembly1
- beer1
- citizen science1
- cookbook1
- cyoa1
- essential genes1
- eukaryote1
- evolution1
- one-health1
- plasmids1
- tnseq1
- vgp1
- virology1
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Difficulty level
- Beginner32
- Intermediate2
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Target audience
- Students34
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Author
- Bérénice Batut17
- Saskia Hiltemann8
- Anthony Bretaudeau3
- Engy Nasr3
- Paul Zierep3
- Alexandre Cormier2
- Anna Syme2
- Anton Nekrutenko2
- Cristóbal Gallardo2
- Dave Clements2
- Deepti Varshney2
- Emma Leith2
- Erwan Corre2
- Helena Rasche2
- Joachim Wolff2
- Laura Leroi2
- Pratik Jagtap2
- Praveen Kumar2
- QIIME22
- Ray Sajulga2
- Simon Gladman2
- Stéphanie Robin2
- Subina Mehta2
- Torsten Seemann2
- Wolfgang Maier2
- Alex Ostrovsky1
- Ava Hoffman1
- Bazante Sanders1
- Cameron Hyde1
- Clea Siguret1
- Coline Royaux1
- Delphine Lariviere1
- Didier Debroas1
- Elischa Berger1
- Eric Tvedte1
- Maria Doyle1
- Mateo Boudet1
- Nadia Goué1
- Natalie Kucher1
- Nathan Dunn1
- Polina Polunina1
- Robert Meller1
- Siyu Chen1
- Sophia Hampe1
- Teresa Müller1
- Verena Moosmann1
- Willem de Koning1
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Contributor
- Saskia Hiltemann28
- Bérénice Batut27
- Helena Rasche26
- Björn Grüning19
- Anthony Bretaudeau11
- Nicola Soranzo9
- Cristóbal Gallardo8
- Niall Beard8
- Teresa Müller7
- William Durand7
- Paul Zierep6
- Deepti Varshney5
- Wolfgang Maier5
- Maria Doyle4
- Engy Nasr3
- Alexandre Cormier2
- Anton Nekrutenko2
- Anup Kumar2
- Christine Oger2
- Clea Siguret2
- Gildas Le Corguillé2
- Mateo Boudet2
- Matthias Bernt2
- Natalie Kucher2
- Nate Coraor2
- Simon Bray2
- Simon Gladman2
- Swathi Nataraj2
- Verena Moosmann2
- Willem de Koning2
- Alex Ostrovsky1
- Anika Erxleben1
- Anna Syme1
- Anne Fouilloux1
- Ava Hoffman1
- Bazante Sanders1
- Beatriz Serrano-Solano1
- Bert Droesbeke1
- Candace Savonen1
- Delphine Lariviere1
- Donny Vrins1
- Ekaterina Polkh1
- Elizabeth Humphries1
- Eric Tvedte1
- Frederick Tan1
- Hans-Rudolf Hotz1
- Jennifer Hillman-Jackson1
- Katherine Cox1
- Linelle Abueg1
- Mehmet Tekman1
- Miaomiao Zhou1
- Mélanie Petera1
- Nuwan Goonasekera1
- Peter van Heusden1
- Siyu Chen1
- Stéphanie Robin1
- Tarnima Omara1
- Vijay1
- mmiladi1
- pimarin1
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Resource type
- e-learning32
- slides2
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