TeSS Sandbox (Training eSupport System)

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- Scientific topic
- Data management105
- Metadata management105
- Research data management (RDM)105
- Algorithms89
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- Data structures89
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- Software development89
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- Exomes64
- Genome annotation64
- Genomes64
- Genomics64
- Personal genomics64
- Synthetic genomics64
- Viral genomics64
- Whole genomes64
- Bottom-up proteomics58
- Discovery proteomics58
- MS-based targeted proteomics58
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- Metaproteomics58
- Peptide identification58
- Protein and peptide identification58
- Proteomics58
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- Operation
- Data handling48
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- Data extraction13
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- Data analysis10
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- Database retrieval5
- Query5
- Query and retrieval5
- Annotation2
- Database search2
- Normalisation2
- Ontology browsing2
- Ontology visualisation2
- RNA-Seq analysis2
- Search2
- Standardisation2
- Standardisation and normalisation2
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Biological network analysis1
- Biological network modelling1
- Biological network prediction1
- Comparison1
- Data editing1
- Data formatting1
- Data reformatting1
- Exome variant detection1
- File format conversion1
- File formatting1
- File reformatting1
- Format conversion1
- Genome variant detection1
- Germ line variant calling1
- Image analysis1
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- Network analysis1
- Network comparison1
- Network modelling1
- Network prediction1
- Network simulation1
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- Quality control1
- Read pre-processing1
- Sequence generation1
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- ggplot210
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- NanoPlot8
- Trimmomatic8
- kraken28
- BCFtools7
- BamTools7
- FASTX-Toolkit7
- Galaxy Image Analysis7
- HISAT27
- RStudio7
- msConvert7
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- Bandage6
- Biopython6
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- Open Babel6
- Workflow4Metabolomics6
- gffread6
- seqtk6
- Bowtie 25
- Flye5
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
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- annotatemyids5
- compute_sequence_length5
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- xcms5
- Bwa-mem24
- Chipster4
- Diamond4
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- MACS4
- MSstats4
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- Newick Utilities4
- SRA Software Toolkit4
- The Protein Data Bank (PDB)4
- Trim Galore4
- UniProt4
- anndata4
- mothur4
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- Apollo3
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- BridgeDb3
- BridgeDbR3
- Cardinal3
- CellProfiler3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMArk3
- Ontology Lookup Service3
- QualiMap3
- R3
- RDKit3
- Salmon3
- SeqCode3
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- Standard database or policy
- Ensembl10
- Protein Data Bank in Europe5
- European Nucleotide Archive4
- NCBI Gene4
- ChEMBL: a large-scale bioactivity database for drug discovery3
- IntAct molecular interaction database3
- Integrated resource of protein families, domains and functional sites3
- ArrayExpress2
- EBI Metagenomics2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- eNanoMapper Ontology2
- Wheat Data Interoperability Guidelines 1
- A repository of mathematical models of biological and biomedical systems1
- BRENDA1
- Bioschemas1
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- Gene Ontology1
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- Genomics England | PanelApp1
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- MetaboLights1
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- Protein Data Bank: Proteins, Interfaces, Structures and Assemblies1
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- Resource Description Framework1
- SUPERFAMILY1
- Schema.org1
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- Structural Classification Of Proteins1
- The European Genome-phenome Archive1
- The Human Metabolome Database1
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- Content provider
- Galaxy Training689
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- GOBLET108
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- DTLS - Dutch Techcentre For Life Sciences40
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- Khan Academy Statistics32
- Bioconductor24
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- Transcriptomics29
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- Contributing to the Galaxy Training Material27
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- Bioinformatics25
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Training materials

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Training materials

Advanced customisation of a Galaxy instance

User, Role, Group, Quota, and Authentication managment

Terraform

Empathy

Introduction to Genome Annotation

Galaxy Interactive Tools

Server: Other

Galaxy on the Cloud

Galaxy and Celery

Galactic Database